rs31372430 SNP Detail

Summary

• ID
  rs31372430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18912885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGAGGA CGTTGGGAGA
  GCGTTCTAGA ACGTTGTCAC TGGGAATAGC TTGATGTCAT CTTTAAAATG CTGATACGAC
  TTAAAGGATA TTTCACATCT TAGTCACAGA ATCTTAAAAC CAAAGCGAGG CCCCGGAATT
  GGTGGAATCT GTATGAAAAA GAGGGACTTC CCCCAAGGTC GCATGGTCAG GACACTGTGG
  Y
  AGAGAGAGGA GGTGGGGATT TCCTTCCTCC TTGCCGGAAC CCTCCTCTTC GGCCCATCTC
  CGCGCATCCT CATCGGCCCC AGGTTGCAGG AAAAGCAGAG AGTGGGGCTG GTCCCGGACA
  GACCCCGAAA AGCCAGAGAG ACTCTCCTGG TCTTTGGAGC GCTCCCCCGC ACCCCTCCCG
  TCCCGTCCCG TCCCGTCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss46025623	mCV25048416	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs31372430					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18912885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18451	CpG island 18451	666 bp distal
Cpgi18452	CpG island 18452	within coordinates
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Rr155272	regulatory region 155272	85 bp distal
Rr167138	regulatory region 167138	within coordinates
Rr167139	regulatory region 167139	1915 bp proximal
Tssr64795	transcription start site region 64795	721 bp downstream
Tssr64796	transcription start site region 64796	21 bp upstream