rs31373016 SNP Detail

Summary

• ID
  rs31373016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAGAGGTC CCAAGGCATC CTTGGGCAGT
  GTCTCTACTT CTGGAAAACA GCCCAGAGGT TCTCCAGGCT GGGCCAAGCA AATCTGTTAT
  CATCGTGACA CCAACTATTC AGTTGAGCTT AGGCCTGTTA GGTGAGAATG CCTGGATGGG
  Y
  CCCTTAAAGT AGCAAAGCCT TCCCCACCCT GAAATAGGGC AGACTGGGAG AGGATTTTTC
  TCCCTTAGTG TTTTTACTCA AAGATGATCC TCCCCCAGAG CCCCTGCCGC CCCCAGCAGG
  CTCTCAGAAC CAGCTCTGCT ACTCCACCAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45024156	mCV23265293	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		C
ss51365820	NES14471128	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	C	T	T		C	T	T	C		C
ss145481847	ENSMUSSNP30299	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss319975147	CHEV_1_133641518	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31373016					SNP	C	C	T	C	T	C	T	T	C	C	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365820	NES14471128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672679 () rs orientation: forward

Symbol	Name	Function Class
Rr24545	regulatory region 24545	1740 bp proximal
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	912 bp downstream
Tssr8661	transcription start site region 8661	746 bp downstream