rs31373214 SNP Detail

Summary

• ID
  rs31373214
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG ATAGTAATAA GAATGTAATT
  W
  AAAAAAAAAT GCTGTGAAGG CTTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39282277	mCV22627423	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss139749933	ENSMUSSNP6737823	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31373214					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415730 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	within coordinates
Rr404213	regulatory region 404213	1308 bp downstream
Rr404214	regulatory region 404214	1401 bp upstream
Tssr4479	transcription start site region 4479	1443 bp downstream
Tssr126623	transcription start site region 126623	1685 bp downstream
Tssr126624	transcription start site region 126624	1647 bp downstream
Tssr126625	transcription start site region 126625	1493 bp downstream
Tssr126626	transcription start site region 126626	1468 bp downstream
Tssr126627	transcription start site region 126627	1386 bp downstream
Tssr126628	transcription start site region 126628	1136 bp downstream
Tssr126629	transcription start site region 126629	445 bp downstream
Tssr126630	transcription start site region 126630	424 bp downstream
Tssr126631	transcription start site region 126631	1288 bp upstream
Tssr126632	transcription start site region 126632	1513 bp upstream
Tssr126633	transcription start site region 126633	1935 bp upstream
Tssr129769	transcription start site region 129769	1687 bp upstream
Tssr129770	transcription start site region 129770	1608 bp upstream
Tssr129771	transcription start site region 129771	111 bp downstream
Tssr129772	transcription start site region 129772	967 bp downstream