rs31373822 SNP Detail

Summary

• ID
  rs31373822
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160760541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTATAG CCAGATTGGC
  ATATTAATAT CAAAGAGAAC GTTATAATGA GAATGAGGTG TGGGATAGTA GGAGTTCTCT
  GAACTGTCTT TGTCATTTTC TGTAAATTTA AAATGCTTCT GTGAAACTGC TTTTGTTTTG
  TTTGTTTGTT TGGTTGGTTT GGTTTGTTTT TAACCAGGAA AAAAATGATT AATCCTACCG
  M
  TAATCAGGAA AATAGAGATT TAGATAACAG CAGGGTTTGT TTTTGTTTCT GTTTCTGTTT
  TTTTTGTTTT GTTTTGGTTT TGTTTGTTTG TTTTTGATCT TCCCACAAAC CAGTGTCTGA
  ATGGTGGTCC CATGTGGTCA TGCAGGGCTC TTGCATGTGC TAGGGAGGGT GCAATCTGTC
  AGGCTCTGGA AAATGCGTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45024174	mCV24552928	ABI	CRAMUS_MOUSE	f	SNP		C	A					C		C
ss60334370	NES15826027	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C	C		C	C	C	C	C	C	C	C	C
ss145902296	ENSMUSSNP337692	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31373822					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60334370	NES15826027	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160760541 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	1034 bp proximal
Rr421729	regulatory region 421729	1047 bp proximal
Rr421730	regulatory region 421730	1344 bp proximal
Rr421731	regulatory region 421731	1581 bp proximal