rs31373835 SNP Detail

Summary

• ID
  rs31373835
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48533068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCAGGA CCTCTACCCT
  ACCCCCAAGC CCCCACCCCT TACCACTTCT TATATCCTAG TGCCTTGCCT CAGAAAATTC
  TCAGGACAGC AAAGTCGGTG ACTTGTAGTC CAGGTCACAG TCATTTCCAG CCCTCCCTCA
  ACATGGGAGA AAGGGTGAGA TACATCATTT TTGTTTAGTG GTGGCTTCCC TGTCAGTTGT
  M
  ATCAAAGTCG TGGAGCAGAA TGAAAAAATG GTGCTTCGAA GAGAGGTTTA AAGTCTTGAC
  GCTGTCAGTC ATGAGACCTT GAAAAGGAAG CAAGGATCTT GGGATTTAGC TCAGGGCAGA
  GGGATTACTT AACAGGCTCA AGGCCCCAGG GGTCATCTCC AGCATCATAC GCAAGTATAG
  TGCGTCAATT TGAAGTTTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46025440	mCV23857831	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss149208226	ENSMUSSNP5744426	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31373835					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48533068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	847 bp distal
E2f8	E2F transcription factor 8	1724 bp upstream
Gm2788	predicted gene 2788	within coordinates
Rr400336	regulatory region 400336	1370 bp downstream
Rr646938	regulatory region 646938	1936 bp distal
Rr646939	regulatory region 646939	1735 bp distal
Rr646940	regulatory region 646940	1234 bp distal
Tssr66768	transcription start site region 66768	1955 bp downstream
Tssr66769	transcription start site region 66769	1454 bp downstream
Tssr66770	transcription start site region 66770	1489 bp upstream
Tssr72633	transcription start site region 72633	1701 bp upstream
Tssr72634	transcription start site region 72634	1649 bp upstream
Tssr72635	transcription start site region 72635	966 bp upstream
Tssr72636	transcription start site region 72636	15 bp downstream