rs31374381 SNP Detail

Summary

• ID
  rs31374381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78633858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA TTCTAGGCCA CCCTGATCTA
  Y
  ATAGTAAAAT CCAGGCCTGT CTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45024366	mCV22632374	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss144751846	ENSMUSSNP4770687	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss319804027	CHEV_1_78652716	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31374381					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78633858 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	1742 bp upstream
Cpgi461	CpG island 461	1353 bp proximal
Rr17618	regulatory region 17618	343 bp proximal
Rr29694	regulatory region 29694	942 bp proximal
Rr371565	regulatory region 371565	441 bp downstream
Rr396121	regulatory region 396121	1556 bp upstream
Tssr7581	transcription start site region 7581	1715 bp upstream
Tssr7582	transcription start site region 7582	1733 bp upstream
Utp14b	UTP14B small subunit processome component	1742 bp upstream