rs31374577 SNP Detail

Summary

• ID
  rs31374577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126419869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACTATAA TGGAGAATAA GCAACACTGA
  AGTGTGAGAC CATGGATGTT TTGGGAGACC ATGCTACTTA AGAGCCACAT CCTCCTCTTC
  CCTTACCatt aaaaaaaaaa aaaaaaaaaG TCATCTATAG GAAGCGAGCC TGTGTGCACA
  R
  GAACATTGAG CACGTGTGTG TGTGTTTCCA TGAGCGCTTC CAGCACAAAG CGAGGTCCCA
  CAGGTGGAAA GGGGTGTGCG TGATGCTTGG CTTGAGCAGC TTCGGAATAT AGTGAATGCT
  AAATCCCTGT ATTTTCTGCC TCGATTGTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45025206	mCV25029381	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		G
ss60794535	NES16466676	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	A	A		G	A	A	G		A
ss145430007	ENSMUSSNP2605313	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss319961020	CHEV_1_128388709	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31374577					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60794535	NES16466676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126419869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	396 bp proximal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	within coordinates
Rr417490	regulatory region 417490	264 bp proximal
Rr417491	regulatory region 417491	600 bp proximal
Tssr13401	transcription start site region 13401	551 bp downstream
Tssr13402	transcription start site region 13402	663 bp downstream
Tssr13403	transcription start site region 13403	708 bp downstream
Tssr13404	transcription start site region 13404	731 bp downstream
Tssr13405	transcription start site region 13405	768 bp downstream