rs31375273 SNP Detail

Summary

• ID
  rs31375273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28391275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT ACCTCCTCTG ACCTCCCCAG
  R
  TACCAGGCAC AAACATGGTG GAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46025566	mCV24575534	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148635382	ENSMUSSNP5665761	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A		G
ss322125997	CHEV_7_29476869	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31375273					SNP	G	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28391275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	1209 bp proximal
Fbxo27	F-box protein 27	999 bp upstream
Rr644337	regulatory region 644337	817 bp proximal
Rr644338	regulatory region 644338	1679 bp proximal
Tssr65494	transcription start site region 65494	966 bp upstream
Tssr65495	transcription start site region 65495	1005 bp upstream
Tssr65496	transcription start site region 65496	1153 bp upstream
Tssr65497	transcription start site region 65497	1162 bp upstream
Tssr65498	transcription start site region 65498	1182 bp upstream