rs31375302 SNP Detail

Summary

• ID
  rs31375302
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30730557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAGCCAGGC AGATCTCTGG AGTTTGAATC CAGCCTCAAT ATCCAGGTGT CTCATAACCT
  CTTCTACCTT CATCTCCTGG GAAATCTGGC GCCCTCTTCT GGCCTCCATA GGCACTCTTT
  CCAAATGCAC AGACACATAC ACTTAAGTGA ATTAAAAAAA AAAAAAAAGA TTGGAGTGCT
  GGTTCTGCAG TTAAGAGCAT GAACTAACTG CTCTTGCAGA GAACTCAGAT TCAGTTCCCA
  ATACCTGTGT TGGGTGGTCC CATATCTCTC TCTCTCTCTG TCTCTCTCTA ATATATATAT
  M
  TATATATATA TATATATATT TTTTTTTTTT TTTTTTTGAG ACAGATCTCT CACTGAGCCT
  GGCCTATTTT TCCCATAGAC TAGCTTGCCA TTGTACCCCC TTCCTCAATG CTCTGCCTAC
  AGGTGTGAGC TCCCACAGCT GGCTCTTTTG TTTGCTTTTT GAGACAAGGT TCCTCTGTGT
  AGCCCTGGCT GTTCTGCAAC TCTCTCTGTA GACGAGGCTG CATTCGAACT CCAGAGATCT
  GCCTGGCTCT GCCTCCCGAG TGCTGGGATT AAAGGCATGC AATGCCACTG CCTGGCTTGT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46024880	mCV22838283	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs31375302					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30730557 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	1596 bp downstream
Rr644976	regulatory region 644976	194 bp distal
Rr644977	regulatory region 644977	656 bp proximal
Tssr65829	transcription start site region 65829	1721 bp upstream