rs31375903 SNP Detail

Summary

• ID
  rs31375903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161080391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAC ACCACAATAA AGAGACTGGA
  Y
  GCAGACTCAA AGTGGCTGAT CTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45024533	mCV24544652	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31375903					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161080391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	1391 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	1611 bp upstream
Rr396460	regulatory region 396460	1472 bp downstream
Rr396461	regulatory region 396461	1010 bp downstream
Rr421777	regulatory region 421777	1667 bp distal
Rr421778	regulatory region 421778	1112 bp distal
Rr421779	regulatory region 421779	within coordinates
Rr421780	regulatory region 421780	1274 bp proximal
Rr421781	regulatory region 421781	1835 bp proximal
Tssr14577	transcription start site region 14577	1912 bp upstream
Tssr14578	transcription start site region 14578	1682 bp upstream
Tssr14579	transcription start site region 14579	1677 bp upstream
Tssr14580	transcription start site region 14580	1635 bp upstream
Tssr14581	transcription start site region 14581	1293 bp upstream