rs31376509 SNP Detail

Summary

• ID
  rs31376509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152554215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAAGATT CTCCCCTCCT
  CCTCACCGGA GTCTTTCCCA CCCATCCTCA TCAGATCTAC TCACTTAGAA ACATAAATGA
  TGCTGGGTAC TTCCACTTCA GCCACACAAT AACCTCACAA GATGTTTACC ACTATCTACT
  CTGGTGAGAA ATGAGAGTCT GAGAAGCTAA GTAACTGGTA GGAAGCGGGA GGTTCCCAAG
  Y
  GACCCCTCCC CATCTTACTC CTCCCCCAAG TCATTTAAGG CACTGTCTCC ATCCCCTCTT
  CTACTCCCAT GTCAGCACGG AAAGCCCATC TCTTCACCCC CTCACCCCTG CTGAACTATT
  CAAGTGGGGC CCTTTCATAC CACCCAGGCT GGTGCCAGGG TCTCCTCTGA CACAACAGCG
  CCCCCTGGAG AAAGGCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45025305	mCV24918150	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss145734380	ENSMUSSNP5081015	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31376509					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152554215 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420516	regulatory region 420516	within coordinates
Rr420517	regulatory region 420517	175 bp proximal