rs31376698 SNP Detail

Summary

• ID
  rs31376698
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152915047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGGCTG TCCTGGAACT
  CACTTTGTAG ACCAGGCTGG CCTCGAACTC AGAAATCCGC CTGCCTCTGC CTCCCAAGTG
  CTGGGATTAG AGGCATGCGC CACCACTGCC CGGCTTGGAC TAAGTCTTAT AAGCAACTTT
  TTGTGCTTTG TTGTGAGACA GGGTCTCTCT GCACAGCTCT GACTTGCCCA CTGAATGCTG
  K
  GATTATGGGT GTATCCCACC AACTTGGCTC TAAGTGTTTA ATACCCTTAA ACAGAGAGAA
  AGAGCCAGAG AGACAGAGAA AGAAAGAGAA AGAGAGAGAG AAAGCCATCC CCAGTTAAAG
  GTTCTCCTTT ATAGGAGTTG CAGTGGTCAT GGTGTCTCTT CACAGCAAGA AATCCCTAAG
  TAAGACATTC TCTCACGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45024938	mCV24633921	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	G
ss145736563	ENSMUSSNP6972618	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31376698					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152915047 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			within coordinates
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420580	regulatory region 420580			1091 bp distal
Rr420581	regulatory region 420581			661 bp proximal
Rr420582	regulatory region 420582			1056 bp proximal
Rr420583	regulatory region 420583			1235 bp proximal