rs31376999 SNP Detail

Summary

• ID
  rs31376999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121395926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAGATT GTGATCTGTT
  ACTTACACCA GCCACCGTAC CCCCTTTCGC ATTAATTCTT GATAGAGCAG CAGGGTACTG
  GCAGTTCTGC AGGCGTAGCA CACAACCCCC GTCACTGCCT AGTGAGAGAC AACGTTAGGA
  CAAGGTAAGA GAAACTTAAA ACACTGCAGG CTTTTTGTAC ATTTTCACCA GGAAAATAAA
  Y
  TCCCAGTGTC TGACAGCTAG ACAGATGTAG CTATAATAAA CATTTCAGCT ATTAACATGT
  CTCAATGAAG AGCATTCCTC TTACTGAGCT CAGCAAAGGA AACTACAATG TGAAACAACT
  TGGAATGGGT AATACTTGAA AACAACGTTG TCCTAGGTCA CACACAGAGA CACAGCACAT
  TGACTACTGT GCCTACTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47046017	NES11261259	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	C		T
ss323513378	CHEV_10_120997077	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31376999					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47046017	NES11261259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121395926 () rs orientation: forward

Symbol	Name	Function Class
Gm68077	predicted gene, 68077	345 bp upstream
Tbk1	TANK-binding kinase 1	within coordinates