rs31377066 SNP Detail

Summary

• ID
  rs31377066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125672151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATATTTTT AAAAAGTTAA ACACCTTTTT
  AAAATAAACT TAATTTTTGG TTACAAGCAT AGAAAGTATT TGGCtttaat ttttaaaatt
  ttttattCAA ACTAAGCAAA ATTGGTTTGT ATTGTTTCCT CTCTTCTGCC CTTCCCCCTT
  Y
  CCCTTCTGCC CCACTCCCTG tgtgctgatt agtttttgtc aacgcaacac tagccagagt
  cctctgggaa gaggaaatct cagttgagaa aaagcttcca tcggattggc cagtaggcaa
  gtctgtgggg agattttctt gattaataat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45025634	mCV23282438	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss145412486	ENSMUSSNP6190646	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss319956347	CHEV_1_127640991	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31377066					SNP	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125672151 () rs orientation: forward

Symbol	Name	Function Class
Gpr39	G protein-coupled receptor 39	within coordinates
Rr371980	regulatory region 371980	within coordinates