rs31377526 SNP Detail

Summary

• ID
  rs31377526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:165064233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAGTTGT CAATCAACGG TCGGTCAGAG GGACCGAGCC
  TGCGGCCCCA AGTACCGCGT GAGGCTGCAC CGAGACCGTC AGACCCCCAG CCCGGACACC
  R
  ACCGGACCTG GCCCGGCTCG GCTCGGCTCG GCTCGGCTCG GCCCGGCCCC GCCCCACAGC
  CTCACTTTTC CACATCCGCA GACTTCATGA TGTGGGTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45024846	mCV24497830	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss145997547	ENSMUSSNP1872054	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31377526					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165064233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi949	CpG island 949			within coordinates
Gm38190	predicted gene, 38190			1539 bp upstream
Rr372385	regulatory region 372385			within coordinates
Rr422343	regulatory region 422343			within coordinates
Rr422344	regulatory region 422344			122 bp distal
Rr422345	regulatory region 422345			269 bp proximal
Rr422346	regulatory region 422346			275 bp proximal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Tssr9804	transcription start site region 9804			157 bp downstream
Tssr14765	transcription start site region 14765			228 bp downstream
Tssr14766	transcription start site region 14766			316 bp downstream