rs31377937 SNP Detail

Summary

• ID
  rs31377937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42300639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT ATCAAGGCTC AGAGGGTACA
  Y
  TAATTGTCAG GACAAGCCCT CCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45025662	mCV25452418	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss47278634	NES11102303	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	T	T	C	T	C		C	T		T
ss149000264	ENSMUSSNP6055194	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss319701929	CHEV_1_42318324	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31377937					SNP	T	T	T	T	C	T	T	C	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278634	NES11102303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42300639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi200	CpG island 200	477 bp proximal
Gm28175	predicted gene 28175	within coordinates
Rr410204	regulatory region 410204	1664 bp distal
Rr410205	regulatory region 410205	555 bp distal
Rr410206	regulatory region 410206	194 bp proximal
Rr410207	regulatory region 410207	460 bp proximal
Rr410208	regulatory region 410208	1223 bp proximal
Tssr6506	transcription start site region 6506	1669 bp downstream
Tssr6507	transcription start site region 6507	444 bp upstream