rs31377955 SNP Detail

Summary

• ID
  rs31377955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121396116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAATAAA TTCCCAGTGT
  CTGACAGCTA GACAGATGTA GCTATAATAA ACATTTCAGC TATTAACATG TCTCAATGAA
  GAGCATTCCT CTTACTGAGC TCAGCAAAGG AAACTACAAT GTGAAACAAC TTGGAATGGG
  TAATACTTGA AAACAACGTT GTCCTAGGTC ACACACAGAG ACACAGCACA TTGACTACTG
  Y
  GCCTACTGAT AACTCATCAA AGCACTAACC TTGGCCATGC TGGCGTCCCC ATCCAGATCA
  TAGCGTGGAT GTATTTTAGG GAGGGAAACT GAAATGTGAA GTACAAGACT TAGAATTAGA
  ATTAAGAATG CCGGGATAAA CGACTGTATT CTTTACATGG CACGGAGACT GTCTAAATCA
  CAAGTGTGAG GCAGTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47046023	NES11261261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	C		T
ss323513380	CHEV_10_120997267	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31377955					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47046023	NES11261261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121396116 () rs orientation: forward

Symbol	Name	Function Class
Gm68077	predicted gene, 68077	155 bp upstream
Tbk1	TANK-binding kinase 1	within coordinates