rs31378221 SNP Detail

Summary

• ID
  rs31378221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189856879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC ACGAACAAGT GCAGTGTCTC
  Y
  CTCTCTGCCT TTTCTCAGCA GGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45025156	mCV23934092	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	T
ss146496102	ENSMUSSNP3008040	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss320192327	CHEV_1_191948561	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31378221					SNP	T	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189856879 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	674 bp upstream
Prox1	prospero homeobox 1	Intron
Rr425913	regulatory region 425913	992 bp distal
Rr425914	regulatory region 425914	360 bp proximal
Rr425915	regulatory region 425915	685 bp proximal