rs31378265 SNP Detail

Summary

• ID
  rs31378265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35112753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATTCAGT TCTATGTTTG
  TGCCAGGCAA AGAATTCATA GTCCCTTGAC ACCTACCAGC ATCCCTGTTA TATCTACTCT
  GGGTCATTCC AGAGCTCAGC ATCCCTCCTG ACTAGAAGCT GCCTACATAG TGCACTGCCC
  TGTGGTGCCA GGTTTTCATG TGCAGCGCCC ATAGGATCAA GCTGGTGCTG AGTCCAGGTT
  Y
  GGTTCTGTTC GGTTGGGAAG CCATCCCCAT CATCCTCATC ATCTCTGTTG ACCTTGCAAC
  ACCTCTGCAA CCACAGTGGA GGGTCCCAAT CTCTCTGGTC TGGACTTTTC TTTCTCTCTC
  TCTAGAAGGC ACCTCCCAAG AAACCTTACA CTGTGATTCT AGCCAATCTA AAAGCTGTAA
  AGTAAATCCA TATGAGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45024856	mCV24868723	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss60718116	NES16346983	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C	C	C	C	C	C
ss148903624	ENSMUSSNP3231398	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31378265					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60718116	NES16346983	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35112753 () rs orientation: forward

Symbol	Name	Function Class
D1Mit243	DNA segment, Chr 1, Massachusetts Institute of Technology 243	1029 bp proximal
Gm53547	predicted gene, 53547	within coordinates