rs31378728 SNP Detail

Summary

• ID
  rs31378728
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:63613463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC GGATCCACCT TCAGAAGTTA
  S
  ATTTGGAGAG TTAGGCCCTG GCAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45025683	mCV22677919	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss149156854	ENSMUSSNP3069064	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss319743836	CHEV_1_63620878	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31378728					SNP	C	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63613463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adam23	a disintegrin and metallopeptidase domain 23			Intron
				Noncoding-Transcript-Variant
Gm22281	predicted gene, 22281			1184 bp downstream
Rr412178	regulatory region 412178			1757 bp distal
Rr412179	regulatory region 412179			261 bp distal