rs31378917 SNP Detail

Summary

• ID
  rs31378917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55207686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTGCAA ATGGAAGTCA
  CAGAGGGGAC GTGAAGGAAG AAATGAATAC TGCAGACCAG GGGGTGTGTC CTGGGAGGAT
  GGGGAGGAAG AAAGATAGGC TAAGGTTACT GTCCTCCTGG CTAAGTGGAA GGGGCAAGGG
  ACACTGTGGA TAGCTGTGTT TGGAATGTCA CTTGACTACA TCTCTCATCC CGTGTCCTCT
  Y
  AGAGACCTGC CTGGGATGGG ATCTAAGGGG ACATTACTAC ATCTGCTGAG GGGGTCATAC
  CTTTGCCGAC TGAAAAGTCA CTGGTCAGTT CCTACACCCC AGGACTTCTG TGGCCCAGCT
  CTGCATATTA TCAGCGTAGG ATACTAACTA GCAGTGGCAC CTAGGTGCTT GCTTGGTGGA
  TGAGCTTCAG AGTTCAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39283423	mCV23144756	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C
ss52723000	NES15567962	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T		C	C	T		C
ss139574390	ENSMUSSNP7116522	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss324641245	CHEV_14_55589066	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31378917					SNP	T	T	T	T	T	T	T	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723000	NES15567962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55207686 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	455 bp downstream
Rr492380	regulatory region 492380	1424 bp distal
Rr492381	regulatory region 492381	68 bp distal
Tssr125718	transcription start site region 125718	1546 bp downstream
Tssr125719	transcription start site region 125719	1454 bp downstream
Tssr125720	transcription start site region 125720	1429 bp downstream
Tssr125721	transcription start site region 125721	1417 bp downstream
Tssr125722	transcription start site region 125722	969 bp downstream
Tssr125723	transcription start site region 125723	927 bp downstream
Tssr125724	transcription start site region 125724	887 bp downstream
Tssr125725	transcription start site region 125725	46 bp downstream
Tssr125726	transcription start site region 125726	22 bp downstream
Tssr125727	transcription start site region 125727	within coordinates
Tssr125728	transcription start site region 125728	804 bp upstream
Tssr125729	transcription start site region 125729	1678 bp upstream
Tssr128753	transcription start site region 128753	1869 bp upstream
Tssr128754	transcription start site region 128754	1799 bp upstream
Tssr128755	transcription start site region 128755	486 bp downstream
Tssr128756	transcription start site region 128756	503 bp downstream