rs31379205 SNP Detail

Summary

• ID
  rs31379205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58624897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC CATGGGTTAC ATAATGTACA
  R
  CCACCAATTT CTAGAGCTGA CCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45026029	mCV23020496	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				A		G
ss49402927	NES12776451	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G		A	A	G	A	G	A
ss149138754	ENSMUSSNP6977426	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31379205					SNP	A	A	A	A	A	A	A	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49402927	NES12776451	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58624897 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi281	CpG island 281			70 bp proximal
D1Mit324	DNA segment, Chr 1, Massachusetts Institute of Technology 324			1876 bp distal
Hycc2	hyccin PI4KA lipid kinase complex subunit 2			Intron
				Noncoding-Transcript-Variant
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3			659 bp upstream
Rr411456	regulatory region 411456			1275 bp distal
Rr411457	regulatory region 411457			within coordinates
Rr411458	regulatory region 411458			443 bp proximal
Rr411459	regulatory region 411459			460 bp proximal
Rr411460	regulatory region 411460			657 bp proximal
Tssr93	transcription start site region 93			890 bp upstream
Tssr6781	transcription start site region 6781			643 bp upstream
Tssr6782	transcription start site region 6782			667 bp upstream
Tssr6783	transcription start site region 6783			853 bp upstream
Tssr11786	transcription start site region 11786			502 bp downstream