rs31379206 SNP Detail

Summary

• ID
  rs31379206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86288566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GACAAGAAGA TGAGCTGTGA
  R
  TGTGAAATGA CTTGGGTGAC ATGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45026031	mCV24369632	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss144876568	ENSMUSSNP2595135	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss319828138	CHEV_1_88257419	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31379206					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86288566 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	within coordinates
Cpgi503	CpG island 503	509 bp distal
Gm71192	predicted gene, 71192	879 bp upstream
Ncl	nucleolin	1444 bp upstream
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	1228 bp downstream
Tssr7749	transcription start site region 7749	1254 bp downstream
Tssr7750	transcription start site region 7750	1152 bp downstream
Tssr12788	transcription start site region 12788	1847 bp upstream
Tssr12789	transcription start site region 12789	1798 bp upstream
Tssr12790	transcription start site region 12790	1463 bp upstream
Tssr12791	transcription start site region 12791	1358 bp upstream
Tssr12792	transcription start site region 12792	878 bp upstream