rs31379954 SNP Detail

Summary

• ID
  rs31379954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121476190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACATGG AGAACCTGGA
  AACCATGACA CTGTCTTCTC TGTGAGTCGC CAAGCCTAGA TGAGGTCATT AGTACCTCTG
  TCTTGTGCTT CATCCTAAGG TTTATTAAAG TTGGTGTCTT GGTCACCAAA AGCTAATTGT
  TTTTCAATGG GTGTTTAAGC ACCCACAGCA AGTGCAACAC CATTTCTGGA ATGCTCCGGG
  Y
  GTTCTGTTTG TCTTGGTCCC AGGAAGTGGG TATAAAACCA GAAACCCAGA GACAGAACAG
  TGAGTGGTCT GAAGTCACTT TCTACCTCTG ATGTCACAGT TACTGTTATT TGTCACTGAG
  CTGCTGTGAG GGTAACTATC AGGCAGAGTT GAGGGTCCTT GCCTTTCTAT TGGCTTAAAG
  TGGCAAAGGT CCTTTACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47046636	NES11257669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		T	C	C	T		C
ss323513956	CHEV_10_121077341	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31379954					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47046636	NES11257669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121476190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2291	CpG island 2291	1032 bp proximal
D930020B18Rik	RIKEN cDNA D930020B18 gene	1303 bp upstream
Rr440257	regulatory region 440257	199 bp proximal
Rr440258	regulatory region 440258	306 bp proximal
Rr440259	regulatory region 440259	1019 bp proximal