rs31381354 SNP Detail

Summary

• ID
  rs31381354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135501992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA CAGGCATAGG GAGACGGCAG
  Y
  CTGGATACAG GAGAGAAGGG AGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45026280	mCV25327091	ABI	CRAMUS_MOUSE	f	SNP	C		T		C
ss51377798	NES14476934	PERLEGEN	MM_PANEL2	f	SNP		T		C			T	T
ss145538301	ENSMUSSNP62590	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
ss319991193	CHEV_1_137470831	CHEVERUD	SCREENING_POP	f	SNP						C			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs31381354					SNP	C	T	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51377798	NES14476934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135501992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419191	regulatory region 419191			1776 bp distal
Rr419192	regulatory region 419192			1443 bp distal
Rr419193	regulatory region 419193			136 bp proximal
Rr419194	regulatory region 419194			1226 bp proximal