rs31381559 SNP Detail

Summary

• ID
  rs31381559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27857575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCTGAA TCACTCGGAA
  TACTTCCACC AATGTGTTTT TGACCTTTGT ACCCATCACG GAGACAGAGA CTACCTCTGC
  CGTAGCCTGG CTGCTTATAC TGCAGCCTGT CAGGCAGCTG GGGCAGCAGT GAAGCCCTGG
  AGGACAGACA GCATCTGCCG TGAGTGTCTC TGACCCCTTG GGTGACCCCA GGCCCTCCTT
  Y
  CCTGTAGAAG TCCCTGCCTG TAACAGGGTT TCTTCCAGCC CTGCCCTGCA TCCTCTATGG
  CTTTCCTCCT TTCCTTCTGG CTCTGGGGTC TCAGACTCCA GTCAAGAGTC CACACTCCCC
  AGCCTCGACA TTCACCTTTT CCCAGGGCTG TTCCCAGCTC TTTCCATACT GACCTGAAAT
  GGAGTTGGGT GGACTGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46025984	mCV25404508	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss148632250	ENSMUSSNP1175192	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31381559					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27857575 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170292	regulatory region 170292	1575 bp distal
Rr170293	regulatory region 170293	1002 bp proximal
Tssr2161	transcription start site region 2161	1124 bp downstream
Tssr65423	transcription start site region 65423	1421 bp downstream
Tssr65424	transcription start site region 65424	1416 bp downstream
Tssr65425	transcription start site region 65425	1076 bp downstream
Tssr65426	transcription start site region 65426	615 bp downstream
Tssr65427	transcription start site region 65427	586 bp downstream
Tssr65428	transcription start site region 65428	569 bp downstream
Tssr65429	transcription start site region 65429	556 bp downstream
Tssr65430	transcription start site region 65430	510 bp downstream
Tssr65431	transcription start site region 65431	496 bp downstream
Tssr65432	transcription start site region 65432	473 bp downstream
Tssr65433	transcription start site region 65433	361 bp downstream
Tssr65434	transcription start site region 65434	301 bp downstream
Tssr65435	transcription start site region 65435	154 bp downstream
Tssr65436	transcription start site region 65436	1276 bp upstream
Tssr65437	transcription start site region 65437	1330 bp upstream