rs31381597 SNP Detail

Summary

• ID
  rs31381597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21695203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATCCTGTCA GATCCCTATG CTGACCACTT CCTTTCAGAT CCTCAGCTGC CCTGCCTCCC
  ACTCCAACTC CAGAGAGCAG CCAGCGGGTC ACAGTGGTCC CGCCCATGGA CCTGGAGCCT
  AGAGAGAAAT GAGCTCGGAA ATCCGGAGCA AATGAGGAGT GGTCCCTGAA ACGTCAGTGG
  CCCTGGATGT CGTGACTGCT AAAGAGAAAA AGAGGAGGAG ACTGTGGGAG TGGCTGGCCA
  AGAGCTCAGC AGGTTTCCCT GATTGCTTCT CATTCCCCTG TCCCTTACAT CCCGTCTCTT
  R
  TAAACAGAAA AACTGCTTTC ACTTTGAGAT ATGAGTGGCC CGATACAGCC AGCTGTGAGA
  GCTGCACTCC CTTCCCTGCC CCACGTGTTT TCTCTTCTCA GGCGACCCCT CCCTGAGCTG
  CTGACAGTGA GTCTGTTCCA AGCTCCAGTG AGGGAGGCAT CCGCCCACTT GGGGCTTCTG
  TCCAAGGTAA GGAGCACCTG TGAGTCTAAC TGCCAGACTC TGATGGGGGT CTCGTCTCTG
  TGGGACTAGA AAGTGTCCCA ACAATCTGAA CAAGGTAACA GAAAGTTACA AAAGTTAAGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46026998	mCV23816017	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145288263	ENSMUSSNP1804288	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31381597					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21695203 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	within coordinates
Gm56906	predicted gene, 56906	within coordinates
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	1725 bp distal
Rr522959	regulatory region 522959	780 bp distal
Rr522960	regulatory region 522960	1237 bp distal
Rr522961	regulatory region 522961	184 bp distal
Rr522962	regulatory region 522962	within coordinates
Rr522963	regulatory region 522963	1193 bp proximal
Tssr142877	transcription start site region 142877	1075 bp downstream
Tssr142878	transcription start site region 142878	668 bp downstream
Tssr142879	transcription start site region 142879	19 bp downstream