rs31382172 SNP Detail

Summary

• ID
  rs31382172
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127689930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCGGCTC CTCAACCCGC
  CCGGCCGGCG CCGCCCCGTC CTCGTCGCAC TCCCCGCCGG CGCTGCCGGC GCCGCCCCGC
  AGCAGCTTCC TGGCCGAGCA CATCCCACCG CCGACTCCGG CCGCCCGCAC GGCTGCCGCT
  GGCCACACCG GGACTCCCGA CGCACACGGG AATCCTTAGA AGCGCGCCCG CCGGCCTGGG
  S
  GCCAGAAGTG CAGGAGCCGC CCGCCCCTCC TGTCAGCCGC TCGCCCCACC CCCAGCTCGG
  GGGCGGAACC CCGGGGGCGG GGGCGGGAGG AGGGGCGGGG CCATAGCGGA CCGCGGCCCA
  ATGAAGGCGG GACCTGGTGG GTTGGGCAGG GTACTGGGAG GGGCGGGGCC AGGGAGGGGC
  GGAACCAAGG GAGGTGTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45528505	mCV23455370	ABI	CRAMUS_MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31382172					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127689930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	within coordinates
Fam241a	family with sequence similarity 241, member A	mRNA-UTR
Rr398009	regulatory region 398009	within coordinates
Rr584895	regulatory region 584895	1974 bp distal
Rr584896	regulatory region 584896	262 bp distal
Rr584897	regulatory region 584897	within coordinates
Tssr35606	transcription start site region 35606	1673 bp upstream
Tssr35607	transcription start site region 35607	768 bp upstream
Tssr35608	transcription start site region 35608	48 bp upstream
Tssr35609	transcription start site region 35609	11 bp upstream
Tssr35610	transcription start site region 35610	within coordinates