rs31382176 SNP Detail

Summary

• ID
  rs31382176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121475530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACCCGGT TTGCCTGCTT
  TAACATTATG CTCATAAATC CTATTCTTTC AAGTTAATTC AAATTAATTC AGTCTACACT
  AACCCTGGAC TCAAGACATA CCGCTCCGTT CTGATGGACG TCGATGTCGT GCCTTTTGAG
  CTTAGCGCCC CGCAAGGAAC CCTCCATTCT CTTGGTGGAA ATGGTTATCG AATGCTTGAT
  Y
  ACTCAGAATC TATTGTGCTA AAAGTTTCTA GAGTTTGGAC AGGCTCAGAT GACAAGGAGC
  GAATACTAAT CTCGGGTGTA TATGGGTTAG CTACTCTGGA GGGATTTGAA AAAACTGGGG
  AACAAAAACA CTTCAGTGTC ATTACTACTT TCTGGCCCTC ACTCCTGCTC TTTGGCAGGC
  TGGGTACTCT CTAGCCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47046609	NES11257727	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		T	C	C	T		C
ss323513950	CHEV_10_121076681	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31382176					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47046609	NES11257727	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121475530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2291	CpG island 2291	1692 bp proximal
D930020B18Rik	RIKEN cDNA D930020B18 gene	1963 bp upstream
Rr440257	regulatory region 440257	859 bp proximal
Rr440258	regulatory region 440258	966 bp proximal
Rr440259	regulatory region 440259	1679 bp proximal