rs31383007 SNP Detail

Summary

• ID
  rs31383007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165954539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTTCTG GCATCTCAAC
  CCCATATCCA GCCCTGGTCC TGGTGAATCA AGTGCATCCT GTCGGTTGAC CTGCCAAATT
  CCTACTTCCA GGTTCAGGCC AGCAGCAGCA CCTCCCAGAA GCCTCTGGTC TTTCCCTGTG
  TGCTTGTCAC CCCTCCCCCA CCCTACCAGC CCACAGCACC ACACATTCTG GAGAGACCAA
  Y
  GTCTAGCTCT CACCACCACG CCTCAGTCCA CCATCCTGGG GAATAGAGCC CAGCGTCATG
  CTGACTGGCT CCTATGACAC TCAGCAGTGG CCCACTTACT GGCTTGGGGA GGGACTCCGG
  AGATAGCGGG CCTGTACAGC TCTCACATCT GCTTCATCCT CCTCGTTTGG AACTACCTGC
  TCCTCCTCTG CGTCTCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49733013	NES13041021	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31383007					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49733013	NES13041021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165954539 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	879 bp downstream
Rr28891	regulatory region 28891	within coordinates
Rr372394	regulatory region 372394	within coordinates
Styxl2	serine/threonine/tyrosine interacting like 2	within coordinates
Tssr9857	transcription start site region 9857	1399 bp downstream
Tssr9858	transcription start site region 9858	19 bp upstream
Tssr14809	transcription start site region 14809	110 bp upstream
Tssr14810	transcription start site region 14810	211 bp downstream
Tssr14811	transcription start site region 14811	906 bp downstream
Tssr14812	transcription start site region 14812	935 bp downstream
Tssr14813	transcription start site region 14813	960 bp downstream