rs31383125 SNP Detail

Summary

• ID
  rs31383125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165956077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG TTAACCCTCT CATGCTCGAC
  R
  TCCTGAGAGT CCGTGCATCC TTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49733005	NES13041033	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31383125					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49733005	NES13041033	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165956077 () rs orientation: forward

Symbol	Name	Function Class
Gpa33	glycoprotein A33 transmembrane	1730 bp upstream
Rr28891	regulatory region 28891	276 bp distal
Rr28892	regulatory region 28892	1923 bp proximal
Rr372394	regulatory region 372394	1342 bp downstream
Styxl2	serine/threonine/tyrosine interacting like 2	610 bp upstream
Tssr9858	transcription start site region 9858	1508 bp downstream
Tssr9859	transcription start site region 9859	1707 bp upstream
Tssr9860	transcription start site region 9860	1739 bp upstream
Tssr9861	transcription start site region 9861	1903 bp upstream
Tssr9862	transcription start site region 9862	1928 bp upstream
Tssr9863	transcription start site region 9863	1960 bp upstream
Tssr14809	transcription start site region 14809	1648 bp upstream
Tssr14810	transcription start site region 14810	1287 bp upstream
Tssr14811	transcription start site region 14811	604 bp upstream
Tssr14812	transcription start site region 14812	588 bp upstream
Tssr14813	transcription start site region 14813	567 bp upstream