rs31383126 SNP Detail

Summary

• ID
  rs31383126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165955984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGG AAGACTTGAT AAACTCCAAA
  R
  GACTCATGAC CCACTCTATG GTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49733006	NES13041031	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31383126					SNP	A	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49733006	NES13041031	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165955984 () rs orientation: forward

Symbol	Name	Function Class
Gpa33	glycoprotein A33 transmembrane	1823 bp upstream
Rr28891	regulatory region 28891	183 bp distal
Rr372394	regulatory region 372394	1249 bp downstream
Styxl2	serine/threonine/tyrosine interacting like 2	517 bp upstream
Tssr9858	transcription start site region 9858	1415 bp downstream
Tssr9859	transcription start site region 9859	1800 bp upstream
Tssr9860	transcription start site region 9860	1832 bp upstream
Tssr9861	transcription start site region 9861	1996 bp upstream
Tssr14809	transcription start site region 14809	1555 bp upstream
Tssr14810	transcription start site region 14810	1194 bp upstream
Tssr14811	transcription start site region 14811	511 bp upstream
Tssr14812	transcription start site region 14812	495 bp upstream
Tssr14813	transcription start site region 14813	474 bp upstream