rs31383638 SNP Detail

Summary

• ID
  rs31383638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165953776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGGATA GCATTGAAAA
  TGTAAACGAG GAAAATACCT AATTAAAAAA AAAAAGAGTT GCTGTGGTTG TGGTGTCTCT
  TCAAAGCAGT AGGACACTGA CTAAGACAGG AAGTGTGGAA GAGTACAACA CCATCTTAAA
  TCTCTAACTA TGATAGCTTT TCTAGGTCTG TCACACGATG CTGAACTTTA AAGGTGAAAT
  Y
  TCTAAATTCC ATCTGGGCCG AGTTCCTGAC CCATGCGTGG TGAGTTCATG GGTCTTAGAC
  AACCCCAAAG CTCATAGCTT ATTTAATGAG CTGTCTTCCT TCACCAGAGA GCTTTGAACA
  CTGAGAAGCA GAAGCCAGTG AGGGAGACTC CAAGAGAACT CAGGAACACT TGGGTGAAGA
  CGAAGCCATG GATGCTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49733024	NES13040998	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31383638					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49733024	NES13040998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165953776 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	116 bp downstream
Rr28891	regulatory region 28891	24 bp proximal
Rr372394	regulatory region 372394	within coordinates
Styxl2	serine/threonine/tyrosine interacting like 2	within coordinates
Tssr9857	transcription start site region 9857	636 bp downstream
Tssr9858	transcription start site region 9858	782 bp upstream
Tssr14809	transcription start site region 14809	641 bp downstream
Tssr14810	transcription start site region 14810	974 bp downstream
Tssr14811	transcription start site region 14811	1669 bp downstream
Tssr14812	transcription start site region 14812	1698 bp downstream
Tssr14813	transcription start site region 14813	1723 bp downstream