rs31383642 SNP Detail

Summary

• ID
  rs31383642
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165952922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTCTTT TTTTCTGAGG
  AAACTCCGCC CAGGGAACAG CTTGGTTCTA CTCCTTTTTA TCTTGATGCT GATGAGCACA
  GTGACTGGAA AAGGCAACGT TTCTCTAGTG AACTGGAAGA TAGTAGGGGT TCTCTGCTCC
  CGACTGTGTT GCTCAAGGAC CTGCCCCGGA GTTTATCTGA ATGAAAAAGA CTCCTCTGTT
  W
  GGTCTACACA AGACTGCCAC TCCCTATCCA CACCCTGGGG AATGTGGTTT GAATAAGAAC
  TGCTTCTGTA GATTCACCGT TTGAATGCTT GGGTATCCGG GAGTGGTACT AGAGAGGGAT
  TTTTAGGTGT GGTCTTGCTG CAGGAAGTGT GTCCCTGGGG GTGGGCTTTG AGGTTTCAAA
  AGCTCAAACC AGGCCCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49733028	NES13041095	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31383642					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49733028	NES13041095	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165952922 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	235 bp upstream
Rr13830	regulatory region 13830	1922 bp distal
Rr25503	regulatory region 25503	1961 bp distal
Rr28891	regulatory region 28891	878 bp proximal
Rr372394	regulatory region 372394	within coordinates
Styxl2	serine/threonine/tyrosine interacting like 2	within coordinates
Tssr9857	transcription start site region 9857	201 bp upstream
Tssr9858	transcription start site region 9858	1636 bp upstream
Tssr14809	transcription start site region 14809	1495 bp downstream
Tssr14810	transcription start site region 14810	1828 bp downstream