rs31383801 SNP Detail

Summary

• ID
  rs31383801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94392039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA CCCTTTCCTT TCCATCAACT
  K
  AGAGGGTGGA GGCAACTCCG CTCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45528243	mCV22282216	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss135505516	ENSMUSSNP5241022	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320840248	CHEV_3_94288654	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31383801					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94392039 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	366 bp distal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	342 bp proximal
Gm65215	predicted gene, 65215	513 bp upstream
Gm65218	predicted gene, 65218	within coordinates
Rr580638	regulatory region 580638	1617 bp distal
Rr580639	regulatory region 580639	524 bp distal
Rr580640	regulatory region 580640	23 bp distal
Rr580641	regulatory region 580641	230 bp proximal
Tssr30454	transcription start site region 30454	397 bp downstream
Tssr30455	transcription start site region 30455	381 bp downstream
Tssr30456	transcription start site region 30456	324 bp downstream
Tssr30457	transcription start site region 30457	1572 bp upstream
Tssr30458	transcription start site region 30458	1600 bp upstream
Tssr34391	transcription start site region 34391	504 bp upstream