rs31383879 SNP Detail

Summary

• ID
  rs31383879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAGGGGG GCAATCTCCT AGCAACCCCA CTGTTGGGCA
  AAACTAATCA AGTGTCCACA CTACGGCTTC ACCCTGCCTC TCCTCTTATC ACCTACTCCC
  Y
  CAGAACAGGG AAGGGTGGCA ACCACTACAT GGTCCTTTGG CACAAACACA ACCTGAATCT
  TAAGAAGCAG TGATGTTGAC TGAGGGAGTT CCCACCCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45529404	mCV23997499	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135862638	ENSMUSSNP6233699	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs31383879					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202028 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	308 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1081 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	578 bp proximal
Tssr35571	transcription start site region 35571	501 bp downstream
Tssr35572	transcription start site region 35572	558 bp downstream
Tssr35573	transcription start site region 35573	607 bp downstream
Tssr35574	transcription start site region 35574	635 bp downstream
Tssr35575	transcription start site region 35575	665 bp downstream