rs31384411 SNP Detail

Summary

• ID
  rs31384411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165952521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCACCAG TAGCAGGACG GCTCCATCTT CCTCTCCTTT
  CATAGGATGG AAACTTTCCT ACCCATCATC CTGGTGAGAC TGTGAGCTGA TACATTTGGG
  Y
  CTGAGAATAA AAGTGTTCTG TGTGGGCACA AAGGCTGACG TGGGTAGACT GCCTGGAGGA
  GTACAACATG GCCAATGCTG CTATGTATCA ACAAACTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49733037	NES13041086	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T
ss146013118	ENSMUSSNP1434326	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31384411					SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49733037	NES13041086	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165952521 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	636 bp upstream
Rr372394	regulatory region 372394	within coordinates
Rr422532	regulatory region 422532	1704 bp distal
Rr422533	regulatory region 422533	146 bp proximal
Styxl2	serine/threonine/tyrosine interacting like 2	within coordinates
Tssr9857	transcription start site region 9857	602 bp upstream
Tssr14809	transcription start site region 14809	1896 bp downstream