rs31385390 SNP Detail

Summary

• ID
  rs31385390
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54411444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT CTTCAGGCTT CCTTGTACTG
  M
  GTGTTTTCCC TGGACAGTGG GCTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39283604	mCV23057155	ABI	CRAMUS_MOUSE	f	SNP		A	A					C		A
ss62393500	NES17236808	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		C	A	A	A		C	A	C	A		C
ss139557119	ENSMUSSNP6258980	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss324635213	CHEV_14_54793662	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31385390					SNP	A	A	A	A	A	A	A	C	C	A	A	A	A	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393500	NES17236808	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54411444 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	376 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Traj42	T cell receptor alpha joining 42	1786 bp upstream
Traj43	T cell receptor alpha joining 43	755 bp upstream
Traj44	T cell receptor alpha joining 44	237 bp downstream
Traj45	T cell receptor alpha joining 45	1097 bp downstream
Traj46	T cell receptor alpha joining 46	1589 bp downstream
Tssr125557	transcription start site region 125557	1875 bp downstream
Tssr125558	transcription start site region 125558	453 bp downstream
Tssr125559	transcription start site region 125559	433 bp downstream
Tssr125560	transcription start site region 125560	397 bp downstream
Tssr125561	transcription start site region 125561	383 bp downstream
Tssr125562	transcription start site region 125562	411 bp upstream
Tssr125563	transcription start site region 125563	613 bp upstream
Tssr125564	transcription start site region 125564	878 bp upstream
Tssr125565	transcription start site region 125565	967 bp upstream
Tssr125566	transcription start site region 125566	1987 bp upstream