rs31385650 SNP Detail

Summary

• ID
  rs31385650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165668032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCAGCCCG CCGTGAGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GAATGTACTG TAATTTAAGT AGTCAAAGAC CTAATGTTAA CTGAGAATTG
  R
  TAGAGCTGGA GGTTAGTGGA GGAAGGTCTG ATTAGTGAGA GGTGTAAAGT GACTTTTTTT
  CTCTCATTTC AAAATTATGT ATTTGTATGC ACTGTAGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45026478	mCV24492581	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146008352	ENSMUSSNP1411077	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31385650					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165668032 () rs orientation: forward

Symbol	Name	Function Class
Cd247	CD247 antigen	within coordinates
Cpgi956	CpG island 956	416 bp proximal
Gm71096	predicted gene, 71096	within coordinates
Gm71107	predicted gene, 71107	596 bp upstream
Rr372389	regulatory region 372389	1540 bp upstream
Rr422482	regulatory region 422482	942 bp distal
Rr422483	regulatory region 422483	195 bp proximal
Rr422484	regulatory region 422484	481 bp proximal
Rr422485	regulatory region 422485	607 bp proximal
Rr422486	regulatory region 422486	1706 bp proximal
Tssr268	transcription start site region 268	1535 bp downstream
Tssr269	transcription start site region 269	565 bp upstream
Tssr9850	transcription start site region 9850	1787 bp downstream
Tssr9851	transcription start site region 9851	593 bp upstream
Tssr9852	transcription start site region 9852	1206 bp upstream