rs31386150 SNP Detail

Summary

• ID
  rs31386150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29892448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT AAGGGGTTCC CTCCTCCCCT
  Y
  GTCTACCTCA TCGTCCTGAC CTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46026472	mCV24567913	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148668587	ENSMUSSNP4563380	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322132179	CHEV_7_30978042	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31386150					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29892448 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	within coordinates
Cpgi18782	CpG island 18782	764 bp proximal
Cpgi18783	CpG island 18783	1456 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	581 bp upstream
Rr644738	regulatory region 644738	73 bp proximal
Tssr65662	transcription start site region 65662	906 bp upstream
Tssr71696	transcription start site region 71696	93 bp upstream
Tssr71697	transcription start site region 71697	72 bp upstream
Tssr71698	transcription start site region 71698	41 bp upstream
Tssr71699	transcription start site region 71699	75 bp downstream
Tssr71700	transcription start site region 71700	97 bp downstream
Tssr71701	transcription start site region 71701	315 bp downstream
Tssr71702	transcription start site region 71702	771 bp downstream
Tssr71703	transcription start site region 71703	977 bp downstream
Tssr71704	transcription start site region 71704	1071 bp downstream
Tssr71705	transcription start site region 71705	1129 bp downstream
Tssr71706	transcription start site region 71706	1997 bp downstream