rs31386451 SNP Detail

Summary

• ID
  rs31386451
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45432940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCCAGAG CTAGAGTAAG
  TTCCAGTAGC GCTGGGATAC AGTGAGACTC CGTCTCGACA AAGCAAATCC ACACAAAACT
  TTGGTGGTGA TTAAAGAGCT GGACATCATA GCCGGCTTCT TCCAGCAGTC CTGACTCCTG
  GCACACCGCT GAGCCAACCA CATTCAAATA CTCAAAAGTA AACATTTGTT GAGTGAACTT
  W
  TGAACAAACG GCGGCGTCAA TCTTCCCGCC CTCATTACTG GTAGCCAGTG CCCGCCCGGC
  CTGTCACCCT CAGGCTAAAA CCCCCGCAGG TGGCGCAACG GACAACCTAA GCCTCCTCGC
  TAGACCAACA AGGACTGCAT TTCCCAGAAG ACTCTGCGCG GGCCCACGAC TCCCTGTGAG
  CTTCTCTTTC TCCAGGCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss46027245	mCV24380718	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss149144999	ENSMUSSNP2016511	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31386451					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45432940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19088	CpG island 19088	within coordinates
Cpgi19089	CpG island 19089	1867 bp proximal
Lmtk3	lemur tyrosine kinase 3	mRNA-UTR
Rr646575	regulatory region 646575	within coordinates
Rr646576	regulatory region 646576	442 bp proximal
Rr646577	regulatory region 646577	1143 bp proximal
Tssr66636	transcription start site region 66636	170 bp upstream
Tssr66637	transcription start site region 66637	367 bp upstream
Tssr66638	transcription start site region 66638	1815 bp upstream
Tssr72472	transcription start site region 72472	1510 bp downstream