rs31387016 SNP Detail

Summary

• ID
  rs31387016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45572439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGCGTTT AGGGAATCCC CAACAATAGT GCCCAATAGA
  AGTGGAAGTA TCTGGAGACA CTAGAGGTAG GGGTGGTGGG ATCTCCCCTG CCCAAGCCTC
  Y
  AAGGAGCGCG GCATCGCAGC ACTTCCTCCC ACAGGAAACC GCAGGCGTCG GGCACACCCA
  GCCTTCAGGC AGTGGCGTCC ACAGCCCGCT TGCAAGAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46026478	mCV23847875	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss149150518	ENSMUSSNP5539363	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31387016					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45572439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	within coordinates
Cpgi19110	CpG island 19110	951 bp proximal
Emp3	epithelial membrane protein 3	1611 bp upstream
Gm45442	predicted gene 45442	within coordinates
Odad1	outer dynein arm docking complex subunit 1	1057 bp upstream
Rr368318	regulatory region 368318	150 bp downstream
Rr368319	regulatory region 368319	within coordinates
Rr400324	regulatory region 400324	1373 bp downstream
Rr400325	regulatory region 400325	342 bp upstream
Rr646609	regulatory region 646609	1144 bp distal
Rr646610	regulatory region 646610	within coordinates
Rr646611	regulatory region 646611	167 bp proximal
Rr646612	regulatory region 646612	1251 bp proximal
Rr646613	regulatory region 646613	1662 bp proximal
Tssr2257	transcription start site region 2257	141 bp upstream
Tssr2258	transcription start site region 2258	1094 bp downstream
Tssr66661	transcription start site region 66661	186 bp upstream
Tssr66662	transcription start site region 66662	519 bp upstream
Tssr66663	transcription start site region 66663	1187 bp upstream
Tssr72498	transcription start site region 72498	1888 bp upstream
Tssr72499	transcription start site region 72499	1703 bp upstream
Tssr72500	transcription start site region 72500	1568 bp upstream
Tssr72501	transcription start site region 72501	173 bp downstream
Tssr72502	transcription start site region 72502	404 bp downstream