rs31387075 SNP Detail

Summary

• ID
  rs31387075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148783997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT CTGTTGCTAC CCTCTGTGTA
  Y
  TGGGGTGATA AGCTATGCAC ATAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45528846	mCV23014072	ABI	CRAMUS_MOUSE	f	SNP		C	T					C	C
ss61098095	NES16608696	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	C	T			T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31387075					SNP	C	C	T	C	T	C	T	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098095	NES16608696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148783997 () rs orientation: forward

Symbol	Name	Function Class
Rr587253	regulatory region 587253	828 bp distal
Rr587254	regulatory region 587254	594 bp proximal
Tssr36091	transcription start site region 36091	1261 bp upstream
Tssr36092	transcription start site region 36092	1233 bp upstream
Tssr36093	transcription start site region 36093	1201 bp upstream
Tssr36094	transcription start site region 36094	1168 bp upstream
Tssr36095	transcription start site region 36095	1095 bp upstream
Tssr36096	transcription start site region 36096	998 bp upstream