rs31387292 SNP Detail

Summary

• ID
  rs31387292
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127200760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTGGCT TCAGACTCAC
  CGTTGAGTTG GCTGCCCTTG CCTCCCAAAT ACTGAGATCG AAGGTGACTG CGCACCACCA
  TACCACACCC AGCTAACAAT AATTTTTTTA AGAGATTTGA CTATCTAAAG TGCCCATGAG
  TAAGCTCCTC CCTGAGAAAC AGGCAGTGTG GTCAAAGGAG GGCTCCTCAC CCTCACGCAT
  M
  GGGTATTGAT GTGCTCAAGT GTGGGCAACA TGTTATCAGA CCCCCACATT CAGAGAGACT
  ACCTTGGCAT GGGACCAAAA AGAGGGTCTA TCTAGCCTGA GGAGGCAGGG AGAGCTGGTT
  TAGAGAGACC TCCTCTAGAA ACAGTCTTCA TATTGGGCTC CCCTTAGTGA AGAGGCTCAC
  AAGGACCAGC CCTTTCCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45528369	mCV23997523	ABI	CRAMUS_MOUSE	f	SNP	C		C	A	A
ss135862620	ENSMUSSNP5012198	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		A
ss320953850	CHEV_3_127110029	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31387292					SNP	C	C	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127200760 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1576 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	within coordinates
Rr584773	regulatory region 584773	630 bp proximal
Rr584774	regulatory region 584774	1846 bp proximal
Tssr35571	transcription start site region 35571	1769 bp downstream
Tssr35572	transcription start site region 35572	1826 bp downstream
Tssr35573	transcription start site region 35573	1875 bp downstream
Tssr35574	transcription start site region 35574	1903 bp downstream
Tssr35575	transcription start site region 35575	1933 bp downstream