rs31388249 SNP Detail

Summary

• ID
  rs31388249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87264433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGTACTACC ATACTTGGCT TTAAACTTAT TTTGGGAGAC AGGTCTCATG TAGGCTGGCT
  TCAAATTTGT TATGCAGCTG AGACTGGCTT TGAACTTCTA GTCCTCCTGA CTCTGTTCCA
  AATGCTGTGG TTACAGATAT GTGCCATTAG AGACTTCATA GTTACTGATC CCTTCCTGTG
  TTTTTTTTTT TTTTTTTTTA AGATAAGCTC GCATGGCCTT GAACTACTAT GTAGAATTGC
  CCAGTGGCCT GGTGCTCATG AGTGAGATTC TTGCCTTTGC TCCATAACTG CTGGAGTTAA
  R
  AAGCATGTGC CCAGTTTATG GCAATTTTTC TTAGTGGAAC AATTTTTTCT AACGTTATAT
  GTTTGTTGAC TTACAGTTTT CAATTAAAAT ATTTTATAGC TAGGTGTAGT GATACTTTGC
  CTTAAATCCC AGCACTTGGG AGGCAGAAGC TGTCAGATCT CAGAGATTGA GGCCAACCTG
  GTCTACAAAG TGAGTTCTAG GACAGCTAGA GCTGCACAAT GAGACACTAT CGCAAAAACA
  AACAAATCAT TATAGCTCCC TTCCATAGAT AGATATATTA AACCCTTTTA ACATTTAGTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45027559	mCV24741732	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31388249					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87264433 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Rr17986	regulatory region 17986	1368 bp proximal
Rr27962	regulatory region 27962	507 bp proximal
Tssr7841	transcription start site region 7841	98 bp downstream