rs31388564 SNP Detail

Summary

• ID
  rs31388564
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113363405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TACCATAACT CAATTTTCAT AGTATTATGC AATTAATATT TGCTTTTGCC ATGAGACTAT
  AAGTTCGACA AATGCAACTA TCATGTCTGC CTTTAGAGAG CCTTTACAAC ACTAGAGATG
  GGTGGATGGA TGGATAGATG GTTAGATTGA TGATGGATGG ATAGATGATT GGATGGATGC
  ATGATGGATG GATGGATGGA TGGATAGATG GTTAGATTGA TGATGGATGG ATAGATGATT
  GGATGGATGG ATGATGGATG GATGGATAGA TGGTTAGATT GATGATGGAT GGATGGATGA
  W
  TGGATGATGG ATGGATGGAT AGATGGTTAG ATTGATGATG GATGGATAGA TGATTGGATG
  GATGGATGGA TGGATGGATA GATGGTTAGA TTGATGATAA ATGGATAGAT GATTGGATGG
  ATGGATGATG GATGGATGGA TAGATGGTTA GATTGATGAT GGATGGATGG ATGGATGGAT
  GATGGATAGA TGATGAATGG ATGGATGATG GATGGATAGA TGATAGATGG ATGAATGGAT
  GATGGATGGA TGGATGGTTG GTTGGTTGAT GGATGATGGA TGAATGGGTG TATGTGGAGG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46028086	mCV24770917	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31388564					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113363405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	1464 bp proximal
Rr653859	regulatory region 653859	1402 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	1830 bp upstream
Tssr68625	transcription start site region 68625	1607 bp upstream
Tssr68626	transcription start site region 68626	1669 bp upstream
Tssr68627	transcription start site region 68627	1738 bp upstream
Tssr68628	transcription start site region 68628	1857 bp upstream
Tssr68629	transcription start site region 68629	1876 bp upstream
Tssr68630	transcription start site region 68630	1915 bp upstream
Tssr68631	transcription start site region 68631	1951 bp upstream