rs31390119 SNP Detail

Summary

• ID
  rs31390119
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143909539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGATGCAT TTACTCGAGG AATTGCTTTT TGTTACAATT
  TCAGCCCTGA CCCAAATGAA TCTGCATTTC CTGCCCTAGG TCTTTAAACT GCCCCCCCCC
  M
  ACGTTTTAAT CGCTCCGAAT TCCTTTTTTA AAAGGGAGGG GGAGGGAGGA GATTCCAAGC
  TGCTCCCCAC CCCCATCTTT AGTGAGAGGT AAATATATA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45530014	mCV23166732	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31390119					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143909539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13894	CpG island 13894	1117 bp distal
Cpgi13895	CpG island 13895	772 bp proximal
Lmo4	LIM domain only 4	Intron
Rr398096	regulatory region 398096	1701 bp upstream
Rr406521	regulatory region 406521	within coordinates
Rr586599	regulatory region 586599	1772 bp distal
Rr586600	regulatory region 586600	892 bp distal
Rr586601	regulatory region 586601	109 bp proximal
Rr586602	regulatory region 586602	1432 bp proximal
Tssr35963	transcription start site region 35963	1825 bp upstream
Tssr35964	transcription start site region 35964	1809 bp upstream
Tssr35965	transcription start site region 35965	1433 bp upstream
Tssr35966	transcription start site region 35966	1411 bp upstream
Tssr35967	transcription start site region 35967	1163 bp upstream
Tssr35968	transcription start site region 35968	1080 bp downstream
Tssr35969	transcription start site region 35969	1108 bp downstream
Tssr35970	transcription start site region 35970	1178 bp downstream
Tssr35971	transcription start site region 35971	1387 bp downstream
Tssr35972	transcription start site region 35972	1729 bp downstream