rs31390375 SNP Detail

Summary

• ID
  rs31390375
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70439250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTGAAC ATCGACCCCC
  GTGGGTCCAA AGTTTCAATC CTCCTTATTA GACTGGATGA TGTGGACTCC ACAAACCACA
  TCTGCAGCAG CACCCCGGGC TTCTGCTTGT TTATGACTTA AAATGAATTT TAAGAGGATT
  TTGTTTGGAG CAATCTGTGT TCATCCCCAA CCCATTCTGT TTTCCTCGGA CAGTCCTAAG
  W
  GTTTGCAGAA GGGAAGGCTG GGGAAGAGTA CTTGAAGCAG ATGCTAGGGG CATCCCAGTT
  AGGGTGTGGC AAGGCTGACT CTGGGCTGTA GGGGATTGGC TGGGCTAGGC AGATGGGGGA
  TACAGACTTA AATTTAGACT CCAGCTCAGC CACCTATTGG TTGTTTACGT TTAGGCTCAT
  TTATCATCCT GGTGGTGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39285046	mCV24337848	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					T		T
ss51532231	NES14630601	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		A	T	T	A	T	T	T
ss139681768	ENSMUSSNP6736994	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31390375					SNP	A	A	T	T	T	T	T	T	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532231	NES14630601	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70439250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm26908	predicted gene, 26908			1618 bp upstream
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			1593 bp upstream
Tssr129550	transcription start site region 129550			1607 bp downstream
Tssr129551	transcription start site region 129551			1654 bp downstream
Tssr129552	transcription start site region 129552			1666 bp downstream