rs31390445 SNP Detail

Summary

• ID
  rs31390445
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37695549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCATAAC TCAAACAAGC
  CGTGCCCACG TCTTCCTTTC TTGTGGATGA GACTTGGCAT ATTTAAAGTC TTCGTTATGG
  AGTTTTAAAT TTTTAAAAAA TAGATATGGC ACAGGAGCAA GGATGGGCAG TTTTCTAGTG
  TCGTTTAGGG CTTCGGCACC ACAACATGCT GTTATGGCCG TGCATCTCAT GTGCGGAGAA
  R
  GTAGTTATAA GCTTAGAGGG GCCTCCAAAA AGCTAACACA TATGTAGTCT GGGGACATTA
  GTTAGCATCC ATAGTAAACC GACGTATTTG TTTTGATTTT CTTTGGATGC CAGAAAAGTG
  CAAAGGGGTG CCTTCTTGAA TTAAGGTGCA TCTGTGAGTT CGGAAGGCAT TTGTGTAAAA
  AAATATCTTA GATACCTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45529722	mCV25185818	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss134809987	ENSMUSSNP2097394	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31390445					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37695549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	within coordinates
Gm42922	predicted gene 42922	175 bp upstream
Rr575523	regulatory region 575523	1310 bp distal
Rr575524	regulatory region 575524	within coordinates
Rr575525	regulatory region 575525	603 bp distal
Rr575526	regulatory region 575526	495 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28908	transcription start site region 28908	1707 bp downstream
Tssr28909	transcription start site region 28909	1488 bp downstream
Tssr28910	transcription start site region 28910	1457 bp downstream
Tssr28911	transcription start site region 28911	1436 bp downstream
Tssr28912	transcription start site region 28912	1414 bp downstream
Tssr28913	transcription start site region 28913	1866 bp upstream