rs31390588 SNP Detail

Summary

• ID
  rs31390588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116389633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG TAGAAACTAA ACGGTGAAAA
  W
  AATGTTGAAT TAAAAAACAA CAAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45529740	mCV23695463	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss135670277	ENSMUSSNP1576890	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320895820	CHEV_3_116298902	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31390588					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116389633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	452 bp distal
Rr397965	regulatory region 397965	920 bp downstream
Rr583746	regulatory region 583746	1513 bp distal
Rr583747	regulatory region 583747	1216 bp distal
Rr583748	regulatory region 583748	964 bp distal
Rr583749	regulatory region 583749	139 bp distal
Rr583750	regulatory region 583750	774 bp distal
Sass6	SAS-6 centriolar assembly protein	within coordinates
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	953 bp downstream
Tssr35316	transcription start site region 35316	1143 bp upstream
Tssr35317	transcription start site region 35317	1086 bp upstream